Newick Utilities

Newick Utilities is a software tool package to manipulate phylogenetic trees. The Newick Utilities package includes trim, re-root, condense, and draw functions.

Topic

Phylogeny;Genomics;Computer science

Detail

  • Operation: Phylogenetic tree generation;Phylogenetic tree analysis;Phylogenetic tree reconstruction

  • Software interface: Command-line user interface

  • Language: C

  • License: Berkeley Source Distribution (BSD) license

  • Cost: Free

  • Version name: -

  • Credit: The Infectigen Foundation, Swiss National Science Foundation.

  • Input: Newick

  • Output: ASCII, SVG

  • Contact: Thomas Junier thomas.junier@unine.ch

  • Collection: -

  • Maturity: Stable

Publications

  • The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell.
  • Junier T, Zdobnov EM. The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell. Bioinformatics. 2010 Jul 1;26(13):1669-70. doi: 10.1093/bioinformatics/btq243. Epub 2010 May 13. PMID: 20472542; PMCID: PMC2887050.
  • https://doi.org/10.1093/bioinformatics/btq243
  • PMID: 20472542
  • PMC: PMC2887050

Download and documentation

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